Provider: KBase, DOE · Website · DOI: 10.1038/nbt.4163
Description
Pangenome data for 293,059 genomes across 27,690 microbial species derived from GTDB r214. Includes core/accessory gene classification, functional annotations, and ANI relationships.
Purpose
Enable comparative genomics at scale. Understand core vs accessory genome content, functional distributions, and evolutionary patterns across bacterial and archaeal species. Answer questions about what makes species unique and what they share.
Scale
- genomes: 293,059
- species: 27,690
- genes: 1B+
- tables: 14
Used by projects (53)
- acinetobacter_adp1_explorer
- adp1_deletion_phenotypes
- alphafold_msa_annotation
- amr_cofitness_networks
- amr_environmental_resistome
- amr_fitness_cost
- amr_pangenome_atlas
- amr_strain_variation
- annotation_gap_discovery
- aromatic_catabolism_network
- bacdive_metal_validation
- bacdive_phenotype_metal_tolerance
- bacillota_b_subsurface_accessory
- berdl_data_atlas
- cf_formulation_design
- clay_confined_subsurface
- cog_analysis
- costly_dispensable_genes
- counter_ion_effects
- ecotype_analysis
- ecotype_env_reanalysis
- ecotype_functional_differentiation
- enigma_carbon_census_1
- enigma_contamination_functional_potential
- env_embedding_explorer
- essential_metabolome
- field_vs_lab_fitness
- fitness_modules
- functional_dark_matter
- fw300_metabolic_consistency
- gene_function_ecological_agora
- genotype_to_phenotype_enigma
- ibd_phage_targeting
- lanthanide_methylotrophy_atlas
- lignin_community_enrichment
- metabolic_capability_dependency
- metal_cross_resistance
- metal_fitness_atlas
- microbeatlas_metal_ecology
- nmdc_community_metabolic_ecology
- pathway_capability_dependency
- pgp_pangenome_ecology
- phage_defense_arsenal
- phb_granule_ecology
- plant_microbiome_ecotypes
- prophage_amr_comobilization
- prophage_ecology
- pseudomonas_carbon_ecology
- snipe_defense_system
- soil_frontier_genomics
- soil_metal_functional_genomics
- truly_dark_genes
- webofmicrobes_explorer